PSU fan you can't really do much about unless you change the whole thing, so that will cost the most.
CPU fan you can get a new heat sink and fan on there, don't know if yours is the standard one that came with the CPU but after market ones are mostly better/quieter and better looking haha.
Case fan... I'm guessing it's at the back? Simplest would be to get a bigger fan, some have lower rpm but move the same amount of air flow as smaller fans. But this depends if you have the right mounting holes for a larger fan. What size fans are on there anyway?
I wouldn't bother with a water cooling system, cost too much just to cool your CPU and it's too much hassle.